Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sulfate abc transporter substrate-binding protein | FAP39_06405 | Not Available | Negative | 1299455 - 1300261 | 28765.3 |
| amino acid abc transporter atp-binding protein | FAP39_06410 | Not Available | Negative | 1300258 - 1300977 | 25987.5 |
| abc transporter permease subunit | FAP39_06415 | Not Available | Negative | 1300971 - 1301675 | 25207.6 |
| flavin reductase family protein | FAP39_06420 | Not Available | Negative | 1301780 - 1302274 | 17917.0 |
| 3'-5' exonuclease | FAP39_06425 | Not Available | Negative | 1302358 - 1303770 | 51354.9 |
| hypothetical protein | FAP39_06430 | Not Available | Negative | 1303770 - 1304291 | 18824.7 |
| cyclic nucleotide-binding/cbs domain-containing protein | FAP39_06435 | Not Available | Negative | 1304362 - 1306185 | 66404.8 |
| cation acetate symporter | FAP39_06440 | Not Available | Negative | 1306296 - 1308083 | 63091.0 |
| duf4212 domain-containing protein | FAP39_06445 | Not Available | Negative | 1308098 - 1308358 | 9543.61 |
| adenylate kinase | FAP39_06450 | Not Available | Negative | 1308435 - 1309118 | 23611.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
