Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| recombinase family protein | FAP39_06350 | Not Available | Negative | 1286996 - 1287607 | 22198.8 |
| hypothetical protein | FAP39_06355 | Not Available | Negative | 1288148 - 1290400 | 83876.9 |
| helix-turn-helix domain-containing protein | FAP39_06360 | Not Available | Negative | 1290598 - 1290837 | 9062.96 |
| duf4102 domain-containing protein | FAP39_06365 | Not Available | Negative | 1291132 - 1292361 | 45688.9 |
| Trna-thr | Not Available | Not Available | Positive | 1292493 - 1292580 | Not Available |
| nad(p)-dependent oxidoreductase | FAP39_06380 | Not Available | Negative | 1294073 - 1295035 | 33912.8 |
| lysr family transcriptional regulator | FAP39_06385 | Not Available | Positive | 1295168 - 1296046 | 31459.5 |
| acetate/propionate family kinase | FAP39_06390 | Not Available | Negative | 1296111 - 1297277 | 41403.5 |
| bifunctional enoyl-coa hydratase/phosphate acetyltransferase | FAP39_06395 | Not Available | Negative | 1297274 - 1298236 | 33662.2 |
| hypothetical protein | FAP39_06400 | Not Available | Positive | 1298436 - 1299458 | 37874.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
