Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| iron abc transporter permease | FAP39_06300 | Not Available | Positive | 1278645 - 1280303 | 58712.5 |
| Trna-thr | Not Available | Not Available | Positive | 1280376 - 1280451 | Not Available |
| hypothetical protein | FAP39_06310 | Not Available | Negative | 1280509 - 1281627 | 41361.4 |
| imma/irre family metallo-endopeptidase | FAP39_06315 | Not Available | Negative | 1281642 - 1282919 | 47692.2 |
| hypothetical protein | FAP39_06320 | Not Available | Positive | 1283386 - 1283961 | 21403.4 |
| hypothetical protein | FAP39_06325 | Not Available | Negative | 1283972 - 1284214 | 8627.61 |
| hypothetical protein | FAP39_06330 | Not Available | Negative | 1284367 - 1284630 | 8772.38 |
| hypothetical protein | FAP39_06335 | Not Available | Negative | 1284627 - 1285343 | 24715.3 |
| hypothetical protein | FAP39_06340 | Not Available | Negative | 1285485 - 1286393 | 34163.7 |
| hypothetical protein | FAP39_06345 | Not Available | Negative | 1286544 - 1286999 | 16394.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
