Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tigr01244 family phosphatase | FAP39_06250 | Not Available | Negative | 1271762 - 1272187 | 14849.7 |
| hypothetical protein | FAP39_06255 | Not Available | Negative | 1272197 - 1272628 | 14965.6 |
| yeee/yede family protein | FAP39_06260 | Not Available | Negative | 1272628 - 1273053 | 14410.2 |
| mbl fold metallo-hydrolase | FAP39_06265 | Not Available | Negative | 1273151 - 1274014 | 31410.0 |
| trar/dksa family transcriptional regulator | FAP39_06270 | Not Available | Positive | 1274150 - 1274479 | 12154.5 |
| hypothetical protein | FAP39_06275 | Not Available | Positive | 1274507 - 1274722 | 8063.44 |
| 3-hydroxyacyl-coa dehydrogenase | FAP39_06280 | Not Available | Positive | 1274884 - 1276968 | 74618.8 |
| hypothetical protein | FAP39_06285 | Not Available | Negative | 1276983 - 1277198 | 7476.68 |
| duf2312 domain-containing protein | FAP39_06290 | Not Available | Positive | 1277374 - 1277634 | 10032.0 |
| hypothetical protein | FAP39_06295 | Not Available | Negative | 1277678 - 1278559 | 32841.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
