Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter atp-binding protein | FAP39_06200 | Not Available | Negative | 1260427 - 1261182 | 27741.5 |
| abc transporter atp-binding protein | FAP39_06205 | Not Available | Negative | 1261194 - 1261949 | 27700.7 |
| branched-chain amino acid abc transporter permease | FAP39_06210 | Not Available | Negative | 1261962 - 1263158 | 43234.6 |
| branched-chain amino acid abc transporter permease | FAP39_06215 | Not Available | Negative | 1263162 - 1264193 | 37020.4 |
| abc transporter substrate-binding protein | FAP39_06220 | Not Available | Negative | 1264314 - 1265657 | 47195.5 |
| helix-turn-helix domain-containing protein | FAP39_06225 | Not Available | Positive | 1265877 - 1267175 | 47000.4 |
| response regulator | FAP39_06230 | Not Available | Positive | 1267245 - 1267613 | 13416.3 |
| hypothetical protein | FAP39_06235 | Not Available | Positive | 1267610 - 1267876 | 9980.25 |
| sodium:solute symporter | FAP39_06240 | Not Available | Positive | 1267877 - 1270567 | 96370.7 |
| hypothetical protein | FAP39_06245 | Not Available | Positive | 1270649 - 1271752 | 39386.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
