Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| preprotein translocase subunit secg | FAP39_06150 | Not Available | Negative | 1252234 - 1252593 | 11892.6 |
| nitrile hydratase subunit alpha | FAP39_06155 | Not Available | Positive | 1252710 - 1253330 | 23176.7 |
| nitrile hydratase subunit beta | FAP39_06160 | Not Available | Positive | 1253327 - 1254001 | 24187.2 |
| nitrile hydratase accessory protein | FAP39_06165 | Not Available | Positive | 1253998 - 1254318 | 11730.8 |
| hypothetical protein | FAP39_06170 | Not Available | Negative | 1254315 - 1254710 | 14969.6 |
| adenylosuccinate synthase | FAP39_06175 | Not Available | Positive | 1254848 - 1256140 | 46477.7 |
| duf2842 domain-containing protein | FAP39_06180 | Not Available | Positive | 1256140 - 1256379 | 8677.96 |
| hypothetical protein | FAP39_06185 | Not Available | Negative | 1256451 - 1258427 | 71041.3 |
| thiamine diphosphokinase | FAP39_06190 | Not Available | Positive | 1258653 - 1259333 | 23913.1 |
| dmt family transporter | FAP39_06195 | Not Available | Negative | 1259257 - 1260198 | 33769.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
