Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| polyhydroxyalkanoate depolymerase | FAP39_06050 | Not Available | Negative | 1232630 - 1233928 | 47769.2 |
| class i poly(r)-hydroxyalkanoic acid synthase | FAP39_06055 | Not Available | Positive | 1234031 - 1235824 | 67488.8 |
| phasin, phap | FAP39_06060 | Not Available | Positive | 1235953 - 1236396 | 15550.6 |
| polyhydroxyalkanoate synthesis repressor phar | FAP39_06065 | Not Available | Positive | 1236544 - 1237098 | 20377.2 |
| aminotransferase class i/ii-fold pyridoxal phosphate-dependent enzyme | FAP39_06070 | Not Available | Negative | 1237164 - 1238381 | 44206.8 |
| fad-binding oxidoreductase | FAP39_06075 | Not Available | Negative | 1238544 - 1239851 | 47316.5 |
| glutamine synthetase | FAP39_06080 | Not Available | Negative | 1239937 - 1241295 | 50412.9 |
| type 1 glutamine amidotransferase | FAP39_06085 | Not Available | Negative | 1241295 - 1241975 | 24790.2 |
| glutamine synthetase | FAP39_06090 | Not Available | Negative | 1242107 - 1243423 | 47619.8 |
| hypothetical protein | FAP39_06095 | Not Available | Positive | 1243643 - 1244050 | 14151.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
