Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| arsenate reductase | FAP39_05995 | Not Available | Positive | 1224317 - 1224628 | 11417.8 |
| hypothetical protein | FAP39_06000 | Not Available | Positive | 1224677 - 1225045 | 12734.8 |
| doxx family protein | FAP39_06005 | Not Available | Negative | 1225029 - 1225589 | 20694.6 |
| duf2063 domain-containing protein | FAP39_06010 | Not Available | Negative | 1225599 - 1226348 | 26905.1 |
| duf2282 domain-containing protein | FAP39_06020 | Not Available | Negative | 1227228 - 1227530 | 10363.6 |
| duf2282 domain-containing protein | FAP39_06025 | Not Available | Negative | 1227667 - 1227972 | 10011.8 |
| threonine--trna ligase | FAP39_06030 | Not Available | Negative | 1228213 - 1230162 | 73789.4 |
| alpha/beta hydrolase | FAP39_06035 | Not Available | Positive | 1230318 - 1231067 | 27371.3 |
| voc family protein | FAP39_06040 | Not Available | Positive | 1231276 - 1231713 | 15831.8 |
| alpha/beta fold hydrolase | FAP39_06045 | Not Available | Positive | 1231808 - 1232518 | 25805.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
