Shimia litoralis strain CL-ES2

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Roseobacteraceae

Genus

Shimia

Description

Shimia litoralis strain CL-ES2 is classified as a Gram-negative bacterium, which is a key characteristic defining its cellular structure and staining properties. This strain possesses a single replicon, indicating a streamlined genomic organization that could influence its replication and genetic stability. The genomic sequence of this strain is accessible under the accession number SULI00000000.1, providing a resource for further research and analysis. In terms of ecological insights, bacteria such as Shimia litoralis often inhabit diverse environments, including coastal and marine ecosystems. Their Gram-negative nature suggests potential roles in biogeochemical cycles, as many Gram-negative bacteria are involved in nutrient cycling and organic matter decomposition. This strain may contribute to the microbial diversity and ecological dynamics of its native habitat, influencing nutrient availability and interactions within microbial communities. Understanding the characteristics of Shimia litoralis strain CL-ES2 can enhance our knowledge of marine microbiomes and their functional roles in ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyRoseobacteraceae
GenusShimia
SpeciesShimia litoralis
Strainstrain CL-ES2

Profile

Physiology
Gram staining propertiesGram-negative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Shimia litoralis strain CL-ES2 scaffold84, whole genome shotgun

Gene Summary

Adenine Count

808021 bp

Thymine Count

807791 bp

Guanine Count

980050 bp

Cytosine Count

974960 bp

Genome Length

3570835 bp

Protein-coding Genes

3325 genes

Non-Coding Genes

95 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
arsenate reductaseFAP39_05995Not AvailablePositive1224317 - 122462811417.8
hypothetical proteinFAP39_06000Not AvailablePositive1224677 - 122504512734.8
doxx family proteinFAP39_06005Not AvailableNegative1225029 - 122558920694.6
duf2063 domain-containing proteinFAP39_06010Not AvailableNegative1225599 - 122634826905.1
duf2282 domain-containing proteinFAP39_06020Not AvailableNegative1227228 - 122753010363.6
duf2282 domain-containing proteinFAP39_06025Not AvailableNegative1227667 - 122797210011.8
threonine--trna ligaseFAP39_06030Not AvailableNegative1228213 - 123016273789.4
alpha/beta hydrolaseFAP39_06035Not AvailablePositive1230318 - 123106727371.3
voc family proteinFAP39_06040Not AvailablePositive1231276 - 123171315831.8
alpha/beta fold hydrolaseFAP39_06045Not AvailablePositive1231808 - 123251825805.9

Displaying genes 1271 – 1280 of 3420 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.