Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | FAP39_05945 | Not Available | Negative | 1215447 - 1216157 | 24904.3 |
| group iii truncated hemoglobin | FAP39_05950 | Not Available | Positive | 1216281 - 1216697 | 15890.9 |
| tigr01620 family protein | FAP39_05955 | Not Available | Negative | 1216703 - 1217692 | 34812.6 |
| ycjx family protein | FAP39_05960 | Not Available | Negative | 1217689 - 1219104 | 52417.5 |
| trna pseudouridine(38-40) synthase trua | FAP39_05965 | Not Available | Positive | 1219214 - 1219978 | 27996.2 |
| beta-ketoacyl-acp synthase iii | FAP39_05970 | Not Available | Positive | 1220152 - 1221273 | 40462.0 |
| hypothetical protein | FAP39_05975 | Not Available | Negative | 1221877 - 1222356 | 16411.1 |
| fad-dependent thymidylate synthase | FAP39_05980 | Not Available | Positive | 1222560 - 1223468 | 34652.3 |
| hypothetical protein | FAP39_05985 | Not Available | Positive | 1223581 - 1223862 | 9500.43 |
| cold-shock protein | FAP39_05990 | Not Available | Negative | 1223899 - 1224105 | 7346.64 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
