Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pilus assembly protein tadb | FAP39_05895 | Not Available | Positive | 1204741 - 1205709 | 35536.4 |
| type ii secretion system f family protein | FAP39_05900 | Not Available | Positive | 1205725 - 1206681 | 34842.0 |
| tetratricopeptide repeat protein | FAP39_05905 | Not Available | Positive | 1206725 - 1207255 | 18912.2 |
| tetratricopeptide repeat protein | FAP39_05910 | Not Available | Positive | 1207284 - 1208141 | 31710.4 |
| hypothetical protein | FAP39_05915 | Not Available | Positive | 1208144 - 1208638 | 17848.5 |
| atpase | FAP39_05920 | Not Available | Positive | 1208751 - 1210058 | 48772.2 |
| nad(p)-dependent oxidoreductase | FAP39_05925 | Not Available | Positive | 1210137 - 1210955 | 29381.3 |
| phosphatidylcholine synthase | FAP39_05930 | Not Available | Positive | 1211060 - 1211758 | 26185.2 |
| methylated-dna--[protein]-cysteine s-methyltransferase | FAP39_05935 | Not Available | Negative | 1211755 - 1212207 | 15820.2 |
| isoleucine--trna ligase | FAP39_05940 | Not Available | Negative | 1212286 - 1215195 | 109598.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
