Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | FAP39_05845 | Not Available | Positive | 1194181 - 1194624 | 15620.7 |
| glutathione s-transferase family protein | FAP39_05850 | Not Available | Positive | 1194698 - 1195402 | 25693.6 |
| l-serine ammonia-lyase | FAP39_05855 | Not Available | Positive | 1195405 - 1196778 | 47803.4 |
| lytic transglycosylase domain-containing protein | FAP39_05860 | Not Available | Negative | 1196838 - 1197647 | 28208.8 |
| hypothetical protein | FAP39_05865 | Not Available | Positive | 1197985 - 1198164 | 6214.49 |
| flp pilus assembly protein cpab | FAP39_05870 | Not Available | Positive | 1198669 - 1199529 | 31274.5 |
| type ii and iii secretion system protein family protein | FAP39_05875 | Not Available | Positive | 1199722 - 1201149 | 50170.9 |
| ompa family protein | FAP39_05880 | Not Available | Positive | 1201165 - 1201800 | 23264.3 |
| pilus assembly protein cpae | FAP39_05885 | Not Available | Positive | 1202017 - 1203270 | 45923.8 |
| cpaf family protein | FAP39_05890 | Not Available | Positive | 1203287 - 1204735 | 52715.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
