Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | FAP39_05790 | Not Available | Positive | 1183910 - 1185493 | 57231.6 |
| vcbs repeat-containing protein | FAP39_05795 | Not Available | Negative | 1185507 - 1186178 | 24214.8 |
| 2fe-2s iron-sulfur cluster binding domain-containing protein | FAP39_05800 | Not Available | Negative | 1186268 - 1186591 | 11732.9 |
| do family serine endopeptidase | FAP39_05810 | Not Available | Negative | 1187497 - 1189020 | 53412.4 |
| duf2065 domain-containing protein | FAP39_05815 | Not Available | Negative | 1189154 - 1189348 | 6702.69 |
| protease modulator hflc | FAP39_05820 | Not Available | Negative | 1189348 - 1190220 | 32510.9 |
| ftsh protease activity modulator hflk | FAP39_05825 | Not Available | Negative | 1190220 - 1191368 | 40913.8 |
| glutathione-disulfide reductase | FAP39_05830 | Not Available | Negative | 1191434 - 1192789 | 48843.8 |
| ribose-5-phosphate isomerase rpia | FAP39_05835 | Not Available | Negative | 1192799 - 1193587 | 28197.9 |
| marr family transcriptional regulator | FAP39_05840 | Not Available | Negative | 1193673 - 1194104 | 16422.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
