Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| septation protein ispz | FAP39_05740 | Not Available | Negative | 1173182 - 1173802 | 23517.5 |
| multidrug transporter | FAP39_05745 | Not Available | Negative | 1173842 - 1174744 | 32565.5 |
| signal recognition particle-docking protein ftsy | FAP39_05750 | Not Available | Negative | 1174783 - 1175949 | 40550.6 |
| lysoplasmalogenase | FAP39_05755 | Not Available | Negative | 1175991 - 1176683 | 24746.0 |
| nadh-quinone oxidoreductase subunit f | FAP39_05760 | Not Available | Negative | 1176811 - 1178499 | 61123.9 |
| alkane 1-monooxygenase | FAP39_05765 | Not Available | Positive | 1178690 - 1179730 | 38433.1 |
| hypothetical protein | FAP39_05770 | Not Available | Positive | 1179763 - 1180155 | 14594.2 |
| exodeoxyribonuclease vii large subunit | FAP39_05775 | Not Available | Negative | 1180183 - 1181667 | 53982.1 |
| phosphoribosylamine--glycine ligase | FAP39_05780 | Not Available | Positive | 1181742 - 1183004 | 44136.4 |
| pas and helix-turn-helix domain-containing protein | FAP39_05785 | Not Available | Positive | 1183144 - 1183839 | 26331.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
