Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| fkbm family methyltransferase | FAP39_05690 | Not Available | Negative | 1161294 - 1162010 | 26583.1 |
| glycine--trna ligase subunit alpha | FAP39_05695 | Not Available | Negative | 1161962 - 1162891 | 34816.1 |
| peptidoglycan-binding protein | FAP39_05700 | Not Available | Positive | 1163044 - 1164792 | 62571.1 |
| 5-guanidino-2-oxopentanoate decarboxylase | FAP39_05705 | Not Available | Negative | 1164874 - 1166457 | 56141.3 |
| trkh family potassium uptake protein | FAP39_05710 | Not Available | Negative | 1166458 - 1167906 | 51824.5 |
| gtp cyclohydrolase i fole2 | FAP39_05715 | Not Available | Negative | 1168105 - 1169205 | 41054.7 |
| o-succinylhomoserine sulfhydrylase | FAP39_05720 | Not Available | Negative | 1169448 - 1170629 | 41943.8 |
| alpha/beta fold hydrolase | FAP39_05725 | Not Available | Positive | 1170878 - 1171831 | 34921.0 |
| glutathione s-transferase family protein | FAP39_05730 | Not Available | Positive | 1171842 - 1172534 | 25927.1 |
| septation protein ispz | FAP39_05735 | Not Available | Negative | 1172546 - 1173157 | 23192.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
