Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit | FAP39_05590 | Not Available | Positive | 1139520 - 1140677 | 41386.8 |
| glycosyltransferase | FAP39_05595 | Not Available | Positive | 1140770 - 1142665 | 70891.0 |
| gntr family transcriptional regulator | FAP39_05600 | Not Available | Negative | 1142643 - 1143281 | 23881.4 |
| pyrimidine 5'-nucleotidase | FAP39_05605 | Not Available | Positive | 1143393 - 1144037 | 23967.2 |
| hypothetical protein | FAP39_05610 | Not Available | Positive | 1144121 - 1144324 | 7081.81 |
| ubih/ubif family hydroxylase | FAP39_05615 | Not Available | Positive | 1144383 - 1145585 | 43486.6 |
| alanine--glyoxylate aminotransferase family protein | FAP39_05620 | Not Available | Negative | 1145675 - 1146793 | 40148.0 |
| lrp/asnc family transcriptional regulator | FAP39_05625 | Not Available | Negative | 1146873 - 1147328 | 16816.4 |
| lrp/asnc family transcriptional regulator | FAP39_05630 | Not Available | Negative | 1147325 - 1147780 | 17155.9 |
| ketol-acid reductoisomerase | FAP39_05635 | Not Available | Positive | 1147914 - 1148936 | 36991.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
