Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cobyrinate a,c-diamide synthase | FAP39_05540 | Not Available | Positive | 1130343 - 1131653 | 45829.6 |
| uroporphyrinogen-iii c-methyltransferase | FAP39_05545 | Not Available | Positive | 1131650 - 1132366 | 25043.1 |
| cobalt transporter | FAP39_05550 | Not Available | Positive | 1132703 - 1133386 | 23870.6 |
| precorrin-6a synthase (deacetylating) | FAP39_05555 | Not Available | Positive | 1133447 - 1134199 | 27410.2 |
| lrp/asnc family transcriptional regulator | FAP39_05560 | Not Available | Negative | 1134203 - 1134652 | 17044.6 |
| amidohydrolase | FAP39_05565 | Not Available | Positive | 1134774 - 1135925 | 40762.6 |
| diaminopropionate ammonia-lyase | FAP39_05570 | Not Available | Positive | 1135922 - 1137115 | 42127.8 |
| asp/glu racemase | FAP39_05575 | Not Available | Positive | 1137132 - 1137875 | 26514.8 |
| phytanoyl-coa dioxygenase | FAP39_05580 | Not Available | Positive | 1138000 - 1138797 | 30012.0 |
| gatb/yqey domain-containing protein | FAP39_05585 | Not Available | Negative | 1138878 - 1139336 | 16503.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
