Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cobalamin biosynthesis protein cobw | FAP39_05490 | Not Available | Positive | 1119660 - 1120697 | 36973.2 |
| cobaltochelatase subunit cobn | FAP39_05495 | Not Available | Positive | 1120703 - 1123999 | 118568.0 |
| precorrin-3b synthase | FAP39_05500 | Not Available | Positive | 1123996 - 1125129 | 40602.8 |
| precorrin-8x methylmutase | FAP39_05505 | Not Available | Positive | 1125129 - 1125758 | 22416.0 |
| precorrin-2 c(20)-methyltransferase | FAP39_05510 | Not Available | Positive | 1125764 - 1126495 | 26875.6 |
| precorrin-3b c(17)-methyltransferase | FAP39_05515 | Not Available | Positive | 1126492 - 1127244 | 27146.7 |
| cobalt-precorrin-6a reductase | FAP39_05520 | Not Available | Negative | 1127217 - 1127975 | 26987.7 |
| precorrin-6y c5,15-methyltransferase (decarboxylating) subunit cbie | FAP39_05525 | Not Available | Positive | 1127974 - 1129185 | 43660.6 |
| cobalamin biosynthesis protein | FAP39_05530 | Not Available | Positive | 1129182 - 1129559 | 12743.2 |
| precorrin-4 c(11)-methyltransferase | FAP39_05535 | Not Available | Positive | 1129556 - 1130350 | 27920.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
