Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| carnitine 3-dehydrogenase | FAP39_05440 | Not Available | Negative | 1109413 - 1110888 | 54416.0 |
| 3-keto-5-aminohexanoate cleavage protein | FAP39_05445 | Not Available | Negative | 1110971 - 1111885 | 32658.3 |
| glxa family transcriptional regulator | FAP39_05450 | Not Available | Positive | 1111963 - 1112961 | 36007.1 |
| molybdenum abc transporter atp-binding protein | FAP39_05455 | Not Available | Negative | 1112958 - 1114043 | 38245.8 |
| molybdate abc transporter permease subunit | FAP39_05460 | Not Available | Negative | 1114040 - 1114735 | 24388.7 |
| molybdate abc transporter substrate-binding protein | FAP39_05465 | Not Available | Negative | 1114732 - 1115493 | 26541.8 |
| cobyric acid synthase | FAP39_05470 | Not Available | Negative | 1115537 - 1116985 | 51110.2 |
| cob(i)yrinic acid a,c-diamide adenosyltransferase | FAP39_05475 | Not Available | Negative | 1117087 - 1117704 | 23014.9 |
| nnrs family protein | FAP39_05480 | Not Available | Negative | 1117786 - 1118949 | 41686.2 |
| duf1636 domain-containing protein | FAP39_05485 | Not Available | Positive | 1119281 - 1119667 | 14026.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
