Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| periplasmic heavy metal sensor | FAP39_05390 | Not Available | Negative | 1103022 - 1103525 | 18584.5 |
| hypothetical protein | FAP39_05395 | Not Available | Negative | 1103530 - 1103913 | 13685.1 |
| rna polymerase sigma factor | FAP39_05400 | Not Available | Negative | 1103906 - 1104490 | 21466.9 |
| calcium-binding protein | FAP39_05405 | Not Available | Negative | 1104575 - 1105087 | 18537.2 |
| duf983 domain-containing protein | FAP39_05410 | Not Available | Positive | 1105307 - 1105693 | 14417.9 |
| nudix hydrolase | FAP39_05415 | Not Available | Positive | 1105723 - 1106427 | 26086.9 |
| dmt family transporter | FAP39_05420 | Not Available | Negative | 1106466 - 1107371 | 32047.2 |
| duf2061 domain-containing protein | FAP39_05425 | Not Available | Negative | 1107456 - 1107662 | 7321.16 |
| helix-turn-helix transcriptional regulator | FAP39_05430 | Not Available | Positive | 1107778 - 1108635 | 32040.2 |
| sdr family oxidoreductase | FAP39_05435 | Not Available | Negative | 1108652 - 1109413 | 26418.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
