Shimia litoralis strain CL-ES2

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Roseobacteraceae

Genus

Shimia

Description

Shimia litoralis strain CL-ES2 is classified as a Gram-negative bacterium, which is a key characteristic defining its cellular structure and staining properties. This strain possesses a single replicon, indicating a streamlined genomic organization that could influence its replication and genetic stability. The genomic sequence of this strain is accessible under the accession number SULI00000000.1, providing a resource for further research and analysis. In terms of ecological insights, bacteria such as Shimia litoralis often inhabit diverse environments, including coastal and marine ecosystems. Their Gram-negative nature suggests potential roles in biogeochemical cycles, as many Gram-negative bacteria are involved in nutrient cycling and organic matter decomposition. This strain may contribute to the microbial diversity and ecological dynamics of its native habitat, influencing nutrient availability and interactions within microbial communities. Understanding the characteristics of Shimia litoralis strain CL-ES2 can enhance our knowledge of marine microbiomes and their functional roles in ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyRoseobacteraceae
GenusShimia
SpeciesShimia litoralis
Strainstrain CL-ES2

Profile

Physiology
Gram staining propertiesGram-negative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Shimia litoralis strain CL-ES2 scaffold84, whole genome shotgun

Gene Summary

Adenine Count

808021 bp

Thymine Count

807791 bp

Guanine Count

980050 bp

Cytosine Count

974960 bp

Genome Length

3570835 bp

Protein-coding Genes

3325 genes

Non-Coding Genes

95 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
peptidoglycan-binding protein lysmFAP39_05290Not AvailableNegative1081552 - 108197414841.4
atp-binding cassette domain-containing proteinFAP39_05295Not AvailableNegative1082042 - 108384164081.0
Trna-glyNot AvailableNot AvailablePositive1084021 - 1084094Not Available
response regulator transcription factorFAP39_05305Not AvailablePositive1084229 - 108495425795.4
gfdt proteinFAP39_05310Not AvailablePositive1084985 - 108614241632.6
pas domain-containing proteinFAP39_05315Not AvailablePositive1086147 - 108834881915.5
duf779 domain-containing proteinFAP39_05320Not AvailableNegative1088345 - 108868012301.5
aldehyde dehydrogenase family proteinFAP39_05325Not AvailableNegative1088757 - 109030155791.6
nad(p)-dependent oxidoreductaseFAP39_05330Not AvailableNegative1090470 - 109135731969.9
radical sam proteinFAP39_05335Not AvailableNegative1091370 - 109308263045.5

Displaying genes 1131 – 1140 of 3420 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.