Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| peptidoglycan-binding protein lysm | FAP39_05290 | Not Available | Negative | 1081552 - 1081974 | 14841.4 |
| atp-binding cassette domain-containing protein | FAP39_05295 | Not Available | Negative | 1082042 - 1083841 | 64081.0 |
| Trna-gly | Not Available | Not Available | Positive | 1084021 - 1084094 | Not Available |
| response regulator transcription factor | FAP39_05305 | Not Available | Positive | 1084229 - 1084954 | 25795.4 |
| gfdt protein | FAP39_05310 | Not Available | Positive | 1084985 - 1086142 | 41632.6 |
| pas domain-containing protein | FAP39_05315 | Not Available | Positive | 1086147 - 1088348 | 81915.5 |
| duf779 domain-containing protein | FAP39_05320 | Not Available | Negative | 1088345 - 1088680 | 12301.5 |
| aldehyde dehydrogenase family protein | FAP39_05325 | Not Available | Negative | 1088757 - 1090301 | 55791.6 |
| nad(p)-dependent oxidoreductase | FAP39_05330 | Not Available | Negative | 1090470 - 1091357 | 31969.9 |
| radical sam protein | FAP39_05335 | Not Available | Negative | 1091370 - 1093082 | 63045.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
