Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| inositol monophosphatase | FAP39_05240 | Not Available | Negative | 1070064 - 1070855 | 28736.5 |
| lysr family transcriptional regulator | FAP39_05245 | Not Available | Negative | 1071054 - 1071959 | 33831.8 |
| methylenetetrahydrofolate reductase | FAP39_05250 | Not Available | Positive | 1072059 - 1072925 | 31278.8 |
| carbohydrate kinase | FAP39_05255 | Not Available | Positive | 1073101 - 1074006 | 31767.0 |
| d-tyrosyl-trna(tyr) deacylase | FAP39_05260 | Not Available | Positive | 1074003 - 1074440 | 15518.6 |
| phna protein | FAP39_05265 | Not Available | Negative | 1074447 - 1074974 | 18721.3 |
| duf4147 domain-containing protein | FAP39_05270 | Not Available | Positive | 1075106 - 1076224 | 39190.1 |
| glycerol kinase glpk | FAP39_05275 | Not Available | Negative | 1076221 - 1077705 | 53236.8 |
| glycerol-3-phosphate dehydrogenase | FAP39_05280 | Not Available | Negative | 1077768 - 1079327 | 57578.7 |
| acyl-coa synthetase | FAP39_05285 | Not Available | Negative | 1079452 - 1081350 | 68945.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
