Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| alpha/beta fold hydrolase | FAP39_05140 | Not Available | Positive | 1046181 - 1046948 | 28437.0 |
| ctp synthetase | FAP39_05145 | Not Available | Negative | 1046972 - 1047157 | 6655.5 |
| m24 family metallopeptidase | FAP39_05150 | Not Available | Positive | 1047481 - 1048665 | 44032.2 |
| acetylornithine deacetylase | FAP39_05155 | Not Available | Positive | 1048670 - 1049851 | 42234.3 |
| gntr family transcriptional regulator | FAP39_05160 | Not Available | Positive | 1049892 - 1050518 | 24032.1 |
| hypothetical protein | FAP39_05165 | Not Available | Positive | 1050782 - 1051279 | 17963.4 |
| peptidase | FAP39_05170 | Not Available | Positive | 1051291 - 1052547 | 44473.5 |
| hypothetical protein | FAP39_05175 | Not Available | Positive | 1052629 - 1053645 | 35848.1 |
| c-type cytochrome | FAP39_05180 | Not Available | Positive | 1053861 - 1055360 | 53725.2 |
| imelysin peptidase | FAP39_05185 | Not Available | Positive | 1055360 - 1056322 | 35074.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
