Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| uracil phosphoribosyltransferase | FAP39_05090 | Not Available | Negative | 1034079 - 1034711 | 23337.8 |
| adenosine deaminase | FAP39_05095 | Not Available | Negative | 1034708 - 1035694 | 35652.9 |
| phosphopentomutase | FAP39_05100 | Not Available | Negative | 1035691 - 1036902 | 42656.3 |
| thymidine phosphorylase | FAP39_05105 | Not Available | Negative | 1036902 - 1038206 | 44569.8 |
| cytidine deaminase | FAP39_05110 | Not Available | Negative | 1038210 - 1038602 | 13542.2 |
| nadp-dependent malic enzyme | FAP39_05115 | Not Available | Positive | 1038893 - 1041172 | 82002.7 |
| propionyl-coa synthetase | FAP39_05120 | Not Available | Positive | 1041441 - 1043333 | 69105.5 |
| nad kinase | FAP39_05125 | Not Available | Negative | 1043408 - 1044169 | 27297.9 |
| serine hydroxymethyltransferase | FAP39_05130 | Not Available | Positive | 1044348 - 1045640 | 46056.7 |
| hypothetical protein | FAP39_05135 | Not Available | Negative | 1045717 - 1046091 | 14071.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
