Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | FAP39_05040 | Not Available | Positive | 1022335 - 1022547 | 8053.52 |
| acyl-coa dehydrogenase | FAP39_05045 | Not Available | Positive | 1022568 - 1023707 | 41883.9 |
| glutathione s-transferase | FAP39_05050 | Not Available | Positive | 1023730 - 1024368 | 23972.1 |
| acetyl-coa c-acetyltransferase | FAP39_05055 | Not Available | Positive | 1024382 - 1025593 | 42444.8 |
| 3-hydroxyacyl-coa dehydrogenase | FAP39_05060 | Not Available | Positive | 1025606 - 1027798 | 78473.0 |
| hypothetical protein | FAP39_05065 | Not Available | Negative | 1027898 - 1028551 | 23532.5 |
| dmt family transporter | FAP39_05070 | Not Available | Negative | 1028748 - 1029647 | 32027.8 |
| acyl-coa synthetase | FAP39_05075 | Not Available | Positive | 1029759 - 1031378 | 58692.3 |
| hypothetical protein | FAP39_05080 | Not Available | Positive | 1031537 - 1032547 | 36275.6 |
| spor domain-containing protein | FAP39_05085 | Not Available | Negative | 1032557 - 1033999 | 50234.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
