Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| multifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/5'-nucleotidase/3'-nucleotidase | FAP39_04990 | Not Available | Negative | 1013750 - 1015324 | 55425.4 |
| duf952 domain-containing protein | FAP39_04995 | Not Available | Positive | 1015434 - 1015775 | 12298.5 |
| quinone-dependent dihydroorotate dehydrogenase | FAP39_05000 | Not Available | Positive | 1015772 - 1016830 | 37091.6 |
| arsenate reductase (glutaredoxin) | FAP39_05005 | Not Available | Positive | 1016827 - 1017165 | 12414.1 |
| mate family efflux transporter | FAP39_05010 | Not Available | Negative | 1017185 - 1018507 | 46944.7 |
| paai family thioesterase | FAP39_05015 | Not Available | Negative | 1018500 - 1019009 | 18908.8 |
| paai family thioesterase | FAP39_05020 | Not Available | Negative | 1019009 - 1019431 | 14849.9 |
| merr family dna-binding transcriptional regulator | FAP39_05025 | Not Available | Positive | 1019549 - 1019923 | 14688.8 |
| merr family dna-binding transcriptional regulator | FAP39_05030 | Not Available | Positive | 1020093 - 1020494 | 15790.1 |
| acyl-coa dehydrogenase | FAP39_05035 | Not Available | Positive | 1020511 - 1022286 | 63877.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
