Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | FAP39_04890 | Not Available | Positive | 992302 - 993033 | 26819.4 |
| duf1467 family protein | FAP39_04895 | Not Available | Negative | 992969 - 993259 | 10564.1 |
| methylmalonyl-coa epimerase | FAP39_04900 | Not Available | Negative | 993337 - 993741 | 14252.0 |
| response regulator | FAP39_04905 | Not Available | Positive | 993913 - 994629 | 25656.8 |
| gnat family n-acetyltransferase | FAP39_04910 | Not Available | Negative | 994631 - 995347 | 26936.6 |
| aspartate--trna ligase | FAP39_04915 | Not Available | Negative | 995500 - 997350 | 69036.1 |
| 4-amino-4-deoxychorismate lyase | FAP39_04920 | Not Available | Negative | 997488 - 998138 | 23813.8 |
| aminodeoxychorismate synthase component i | FAP39_04925 | Not Available | Negative | 998093 - 999220 | 41320.8 |
| carbamoyl-phosphate synthase large subunit | FAP39_04930 | Not Available | Positive | 999412 - 1002744 | 120327.0 |
| dmt family transporter | FAP39_04935 | Not Available | Negative | 1003156 - 1003758 | 21110.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
