Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | FAP39_04840 | Not Available | Negative | 987598 - 987852 | 9328.06 |
| hypothetical protein | FAP39_04845 | Not Available | Negative | 987878 - 988147 | 9882.7 |
| hypothetical protein | FAP39_04850 | Not Available | Negative | 988144 - 988419 | 10277.0 |
| hypothetical protein | FAP39_04855 | Not Available | Negative | 988416 - 988679 | 9655.64 |
| yigz family protein | FAP39_04860 | Not Available | Negative | 988776 - 989132 | 13083.8 |
| peptidase m48 | FAP39_04865 | Not Available | Negative | 989138 - 989842 | 24471.4 |
| hypothetical protein | FAP39_04870 | Not Available | Positive | 989984 - 990232 | 9099.62 |
| duf167 domain-containing protein | FAP39_04875 | Not Available | Negative | 990222 - 990566 | 12717.7 |
| class ii histone deacetylase | FAP39_04880 | Not Available | Positive | 990561 - 991670 | 40027.7 |
| nitroreductase | FAP39_04885 | Not Available | Positive | 991739 - 992317 | 20923.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
