Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| multidrug abc transporter permease | FAP39_04790 | Not Available | Negative | 976973 - 977758 | 27928.0 |
| gcra cell cycle regulator | FAP39_04795 | Not Available | Positive | 977902 - 978486 | 21092.5 |
| prephenate dehydrogenase | FAP39_04800 | Not Available | Negative | 978548 - 979309 | 27233.4 |
| asma family protein | FAP39_04805 | Not Available | Negative | 979544 - 981457 | 66196.5 |
| hypothetical protein | FAP39_04810 | Not Available | Negative | 981530 - 981895 | 13507.5 |
| is256 family transposase | FAP39_04815 | Not Available | Positive | 982217 - 983431 | 45553.4 |
| hypothetical protein | FAP39_04820 | Not Available | Negative | 983458 - 984213 | 27684.9 |
| 30s ribosomal protein s12 methylthiotransferase rimo | FAP39_04825 | Not Available | Positive | 984532 - 985941 | 51757.5 |
| hypothetical protein | FAP39_04830 | Not Available | Positive | 986131 - 987159 | 36844.9 |
| diacylglycerol kinase | FAP39_04835 | Not Available | Negative | 987182 - 987544 | 12994.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
