Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| methylmalonyl co-a mutase-associated gtpase meab | FAP39_04740 | Not Available | Negative | 964394 - 965377 | 35515.7 |
| duf3108 domain-containing protein | FAP39_04745 | Not Available | Positive | 965432 - 966196 | 27849.4 |
| atp-dependent helicase hrpb | FAP39_04750 | Not Available | Positive | 966250 - 968694 | 88612.0 |
| nudix hydrolase | FAP39_04755 | Not Available | Positive | 968789 - 969247 | 16781.0 |
| inorganic phosphate transporter | FAP39_04760 | Not Available | Positive | 969338 - 970819 | 51317.7 |
| nadp-dependent phosphogluconate dehydrogenase | FAP39_04765 | Not Available | Negative | 970892 - 972304 | 50129.0 |
| 2-dehydropantoate 2-reductase | FAP39_04770 | Not Available | Negative | 972385 - 973413 | 37227.9 |
| ornithine carbamoyltransferase | FAP39_04775 | Not Available | Negative | 973671 - 974597 | 34136.8 |
| aspartate aminotransferase family protein | FAP39_04780 | Not Available | Negative | 974602 - 975783 | 41556.7 |
| dmt family transporter | FAP39_04785 | Not Available | Positive | 976083 - 976955 | 30572.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
