Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| d-cysteine desulfhydrase | FAP39_04685 | Not Available | Negative | 953260 - 954264 | 35492.7 |
| histidinol dehydrogenase | FAP39_04690 | Not Available | Negative | 954269 - 955576 | 46660.7 |
| lysr family transcriptional regulator | FAP39_04695 | Not Available | Positive | 955668 - 956633 | 35522.3 |
| trimethylamine methyltransferase | FAP39_04700 | Not Available | Negative | 956666 - 958198 | 54342.9 |
| fad-dependent oxidoreductase | FAP39_04705 | Not Available | Positive | 958384 - 960786 | 87856.2 |
| low molecular weight phosphotyrosine protein phosphatase | FAP39_04710 | Not Available | Negative | 960817 - 961278 | 16570.5 |
| 2-dehydro-3-deoxygalactonokinase | FAP39_04715 | Not Available | Negative | 961275 - 961976 | 24513.8 |
| nad-dependent deacylase | FAP39_04720 | Not Available | Positive | 962099 - 962797 | 25182.5 |
| copper chaperone pcu(a)c | FAP39_04725 | Not Available | Negative | 962883 - 963383 | 17697.3 |
| 50s ribosomal protein l28 | FAP39_04735 | Not Available | Negative | 963891 - 964181 | 10450.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
