Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | FAP39_04635 | Not Available | Negative | 947501 - 948058 | 20924.2 |
| sugar phosphate isomerase/epimerase | FAP39_04640 | Not Available | Negative | 948100 - 948915 | 29978.4 |
| rhodanese-like domain-containing protein | FAP39_04645 | Not Available | Negative | 948982 - 949563 | 21027.2 |
| hypothetical protein | FAP39_04650 | Not Available | Negative | 949594 - 950094 | 17604.0 |
| universal stress protein | FAP39_04655 | Not Available | Negative | 950100 - 950507 | 14831.5 |
| universal stress protein | FAP39_04660 | Not Available | Negative | 950533 - 950940 | 14818.7 |
| antibiotic biosynthesis monooxygenase | FAP39_04665 | Not Available | Negative | 951014 - 951334 | 12191.5 |
| hypothetical protein | FAP39_04670 | Not Available | Positive | 951498 - 952145 | 23395.1 |
| hypothetical protein | FAP39_04675 | Not Available | Positive | 952263 - 952583 | 11910.4 |
| aspartate/glutamate racemase family protein | FAP39_04680 | Not Available | Negative | 952580 - 953263 | 24460.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
