Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lysr family transcriptional regulator argp | FAP39_04585 | Not Available | Positive | 936434 - 937324 | 31924.8 |
| yebc/pmpr family dna-binding transcriptional regulator | FAP39_04590 | Not Available | Negative | 937418 - 938158 | 26923.6 |
| slc13 family permease | FAP39_04595 | Not Available | Positive | 938293 - 940065 | 62145.1 |
| aldehyde dehydrogenase | FAP39_04600 | Not Available | Negative | 940062 - 941063 | 36192.6 |
| (s)-ureidoglycine aminohydrolase | FAP39_04605 | Not Available | Negative | 941176 - 941997 | 30573.2 |
| Trna-arg | Not Available | Not Available | Positive | 942455 - 942532 | Not Available |
| hypothetical protein | FAP39_04615 | Not Available | Negative | 942660 - 943688 | 36994.6 |
| toxin-activating lysine-acyltransferase | FAP39_04620 | Not Available | Negative | 943688 - 944194 | 18634.4 |
| etc complex i subunit | FAP39_04625 | Not Available | Negative | 944320 - 944631 | 11556.6 |
| excinuclease abc subunit uvrb | FAP39_04630 | Not Available | Positive | 945263 - 947446 | 81734.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
