Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain 2016WA-NCV |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1298235 bp
Thymine Count
1310387 bp
Guanine Count
1400987 bp
Cytosine Count
1385082 bp
Genome Length
5394691 bp
Protein-coding Genes
4969 genes
Non-Coding Genes
283 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| inositol 2-dehydrogenase | E0E99_23890 | Not Available | Positive | 4774377 - 4775363 | 36167.0 |
| sugar abc transporter substrate-binding protein | E0E99_23895 | Not Available | Positive | 4775402 - 4776331 | 32858.5 |
| sugar abc transporter atp-binding protein | E0E99_23900 | Not Available | Positive | 4776383 - 4777930 | 56339.0 |
| abc transporter permease | E0E99_23905 | Not Available | Positive | 4777942 - 4778970 | 36405.8 |
| gfo/idh/moca family oxidoreductase | E0E99_23910 | Not Available | Positive | 4778979 - 4780112 | 41241.5 |
| 5-dehydro-2-deoxygluconokinase | E0E99_23915 | Not Available | Positive | 4780125 - 4782029 | 69937.6 |
| myo-inosose-2 dehydratase | E0E99_23920 | Not Available | Positive | 4782044 - 4782934 | 32678.9 |
| 5-deoxy-glucuronate isomerase | E0E99_23925 | Not Available | Positive | 4782944 - 4783762 | 30853.3 |
| autotransporter outer membrane beta-barrel domain-containing protein | E0E99_23930 | Not Available | Negative | 4783977 - 4788332 | 152272.0 |
| attachment protein | E0E99_23935 | Not Available | Negative | 4788766 - 4792308 | 126383.0 |
Pathways
1346 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

