Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain 2016WA-NCV |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1298235 bp
Thymine Count
1310387 bp
Guanine Count
1400987 bp
Cytosine Count
1385082 bp
Genome Length
5394691 bp
Protein-coding Genes
4969 genes
Non-Coding Genes
283 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| integrase | E0E99_23585 | Not Available | Negative | 4698280 - 4699521 | 46766.5 |
| Tmrna,resume consensus sequence (at 84): aatagtcgcaaacgacga | Not Available | Not Available | Positive | 4699726 - 4700089 | Not Available |
| hlyd family efflux transporter periplasmic adaptor subunit | E0E99_23595 | Not Available | Negative | 4700162 - 4701325 | 43121.1 |
| type i secretion system permease/atpase | E0E99_23600 | Not Available | Negative | 4701333 - 4703519 | 80568.4 |
| type i secretion protein tolc | E0E99_23605 | Not Available | Negative | 4703516 - 4704925 | 51538.9 |
| bapa prefix-like domain-containing protein | E0E99_23610 | Not Available | Negative | 4705026 - 4716257 | 375553.0 |
| murr/rpir family transcriptional regulator | E0E99_23615 | Not Available | Positive | 4716690 - 4717514 | 29510.7 |
| phosphopyruvate hydratase | E0E99_23620 | Not Available | Negative | 4717570 - 4718868 | 45602.5 |
| ctp synthase (glutamine hydrolyzing) | E0E99_23625 | Not Available | Negative | 4718956 - 4720593 | 60170.5 |
| nucleoside triphosphate pyrophosphohydrolase | E0E99_23630 | Not Available | Negative | 4720818 - 4721609 | 30390.0 |
Pathways
1346 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

