Citrobacter freundii strain 2016WA-NCV

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Citrobacter

Description

Citrobacter freundii strain 2016WA-NCV is a Gram-negative, rod-shaped bacterium that is classified as a facultative anaerobe. This strain possesses flagella, allowing for motility, and is characterized by having a single replicon. It has been isolated from diverse habitats, including hospital sewage, the intestinal tract, various sewage sources, soil, and surface waters. This bacterium is known for its role as an opportunistic pathogen, capable of causing infections in various hosts. In humans, it is associated with infections of the urinary and respiratory tracts, as well as wound infections. In veterinary contexts, C. freundii can lead to respiratory tract infections in dogs, pleuritis and urinary tract infections in cats, and respiratory issues in horses. The strain has also been identified in a range of animal hosts including mammals, amphibians, and fish, indicating its ecological versatility. The presence of C. freundii in hospital sewage and its link to infections highlights its potential public health implications, particularly in healthcare settings where immunocompromised individuals may be at greater risk. Its survival in both environmental and clinical contexts underscores the importance of monitoring such pathogens to prevent outbreaks and manage infections effectively. Furthermore, understanding the ecological niches occupied by C. freundii can provide insights into its transmission pathways and the dynamics of microbial communities in various habitats.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusCitrobacter
SpeciesCitrobacter freundii
Strainstrain 2016WA-NCV

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranesNot Available
Image of Citrobacter freundii strain 2016WA-NCV
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
Habitathospital sewage; intestinal tract; sewage; soil; surface waters
Biotic relationshipNot Available
Host(s)Homo sapiens, Metazoa, Oryctolagus cuniculus
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Citrobacter freundii strain 2016WA-NCV PROKKA_contig000212, whole

Gene Summary

Adenine Count

1298235 bp

Thymine Count

1310387 bp

Guanine Count

1400987 bp

Cytosine Count

1385082 bp

Genome Length

5394691 bp

Protein-coding Genes

4969 genes

Non-Coding Genes

283 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ssra-binding protein smpbE0E99_22695Not AvailableNegative4535138 - 453562018184.0
type ii toxin-antitoxin system rata family toxinE0E99_22700Not AvailablePositive4535763 - 453621816856.5
rnfh family proteinE0E99_22705Not AvailablePositive4536202 - 453649811017.4
outer membrane protein assembly factor bameE0E99_22710Not AvailableNegative4536549 - 453689312506.0
dna repair protein recnE0E99_22715Not AvailableNegative4537043 - 453870461408.2
nad(+) kinaseE0E99_22720Not AvailableNegative4538790 - 453966832552.3
molecular chaperone grpeE0E99_22725Not AvailablePositive4539600 - 45397947192.82
nucleotide exchange factor grpeE0E99_22730Not AvailablePositive4539791 - 454038421745.9
duf21 domain-containing proteinE0E99_22735Not AvailableNegative4540434 - 454172348104.1
inner membrane protein ypjdE0E99_22740Not AvailableNegative4541742 - 454253329202.8

Displaying genes 4441 – 4450 of 5252 in total

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Infections in animalsCausesPMC6885840
Infections of the urinary and respiratory tracts in humansCausesPMC6885840
Respiratory tract and wound infections in horsesCausesPMC6885840
Respiratory tract infections in dogsCausesPMC6885840
Pleuritis and urinary tract infections in catsCausesPMC6885840
Bacterial infectionsCausesPMC7578172
Opportunistic infectionsCausesPMC12838003

Displaying health effects 1 – 7 of 7 in total