Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain 2016WA-NCV |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1298235 bp
Thymine Count
1310387 bp
Guanine Count
1400987 bp
Cytosine Count
1385082 bp
Genome Length
5394691 bp
Protein-coding Genes
4969 genes
Non-Coding Genes
283 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rna polymerase sigma factor flia | E0E99_19375 | Not Available | Negative | 3908517 - 3909236 | 27461.8 |
| flagellin flic | E0E99_19380 | Not Available | Negative | 3909399 - 3910880 | 51601.8 |
| flagellar filament capping protein flid | E0E99_19390 | Not Available | Positive | 3911136 - 3912539 | 49601.1 |
| flagellar export chaperone flis | E0E99_19395 | Not Available | Positive | 3912555 - 3912962 | 14581.3 |
| flagella biosynthesis regulatory protein flit | E0E99_19400 | Not Available | Positive | 3912962 - 3913333 | 13977.8 |
| alpha-amylase | E0E99_19405 | Not Available | Positive | 3913402 - 3914889 | 56449.8 |
| lipoprotein | E0E99_19410 | Not Available | Negative | 3914930 - 3915343 | 15047.2 |
| selenium metabolism membrane protein yede/fdht | E0E99_19415 | Not Available | Positive | 3915529 - 3916734 | 44336.3 |
| putative sulfurtransferase yedf | E0E99_19420 | Not Available | Positive | 3916731 - 3916964 | 8639.5 |
| gtra family protein | E0E99_19425 | Not Available | Positive | 3917140 - 3917502 | 13208.5 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

