Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain 2016WA-NCV |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1298235 bp
Thymine Count
1310387 bp
Guanine Count
1400987 bp
Cytosine Count
1385082 bp
Genome Length
5394691 bp
Protein-coding Genes
4969 genes
Non-Coding Genes
283 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lysr family transcriptional regulator | E0E99_18965 | Not Available | Positive | 3823069 - 3823959 | 33034.3 |
| tripartite tricarboxylate transporter permease | E0E99_18970 | Not Available | Negative | 3824030 - 3825544 | 52617.1 |
| tripartite tricarboxylate transporter tctb family protein | E0E99_18975 | Not Available | Negative | 3825555 - 3825989 | 15914.3 |
| tripartite tricarboxylate transporter substrate binding protein | E0E99_18980 | Not Available | Negative | 3826004 - 3826981 | 35500.9 |
| transcriptional regulator tctd | E0E99_18985 | Not Available | Positive | 3827135 - 3827809 | 25196.6 |
| sensor histidine kinase | E0E99_18990 | Not Available | Positive | 3827796 - 3829247 | 54400.3 |
| fimbrial protein | E0E99_18995 | Not Available | Negative | 3829240 - 3830313 | 37864.5 |
| fimbrial biogenesis outer membrane usher protein | E0E99_19000 | Not Available | Negative | 3830324 - 3832882 | 94284.9 |
| molecular chaperone | E0E99_19005 | Not Available | Negative | 3832896 - 3833567 | 25160.1 |
| type 1 fimbrial protein | E0E99_19010 | Not Available | Negative | 3833622 - 3834200 | 19480.8 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

