Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain 2016WA-NCV |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1298235 bp
Thymine Count
1310387 bp
Guanine Count
1400987 bp
Cytosine Count
1385082 bp
Genome Length
5394691 bp
Protein-coding Genes
4969 genes
Non-Coding Genes
283 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| carbon starvation induced protein csid | E0E99_17745 | Not Available | Positive | 3612126 - 3613103 | 37207.3 |
| l-2-hydroxyglutarate oxidase | E0E99_17750 | Not Available | Positive | 3613123 - 3614391 | 45996.7 |
| nadp-dependent succinate-semialdehyde dehydrogenase i | E0E99_17755 | Not Available | Positive | 3614415 - 3615863 | 51847.1 |
| 4-aminobutyrate--2-oxoglutarate transaminase | E0E99_17760 | Not Available | Positive | 3615889 - 3617172 | 45807.4 |
| gaba permease | E0E99_17765 | Not Available | Positive | 3617315 - 3618715 | 50949.8 |
| dna-binding transcriptional regulator csir | E0E99_17770 | Not Available | Positive | 3618761 - 3619447 | 26057.6 |
| peptidoglycan-binding protein lysm | E0E99_17775 | Not Available | Negative | 3619460 - 3619909 | 16034.9 |
| yqae/pmp3 family membrane protein | E0E99_17780 | Not Available | Negative | 3620005 - 3620163 | 5864.59 |
| arsr family transcriptional regulator | E0E99_17785 | Not Available | Positive | 3620348 - 3620647 | 10617.0 |
| duf2892 domain-containing protein | E0E99_17790 | Not Available | Positive | 3620657 - 3621184 | 18543.7 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

