Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain 2016WA-NCV |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1298235 bp
Thymine Count
1310387 bp
Guanine Count
1400987 bp
Cytosine Count
1385082 bp
Genome Length
5394691 bp
Protein-coding Genes
4969 genes
Non-Coding Genes
283 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| high-affinity branched-chain amino acid abc transporter permease livm | E0E99_15045 | Not Available | Positive | 3099306 - 3100583 | 46371.1 |
| abc transporter atp-binding protein | E0E99_15050 | Not Available | Positive | 3100580 - 3101347 | 28437.7 |
| high-affinity branched-chain amino acid abc transporter atp-binding protein livf | E0E99_15055 | Not Available | Positive | 3101365 - 3102078 | 26263.8 |
| hypothetical protein | E0E99_15060 | Not Available | Positive | 3102181 - 3102462 | 10866.6 |
| type ii toxin-antitoxin system phd/yefm family antitoxin | E0E99_15065 | Not Available | Positive | 3102584 - 3102805 | 8306.9 |
| type ii toxin-antitoxin system death-on-curing family toxin | E0E99_15070 | Not Available | Positive | 3102802 - 3103170 | 13618.8 |
| sn-glycerol-3-phosphate abc transporter substrate-binding protein ugpb | E0E99_15075 | Not Available | Positive | 3103414 - 3104730 | 48254.1 |
| sn-glycerol-3-phosphate abc transporter permease ugpa | E0E99_15080 | Not Available | Positive | 3104831 - 3105718 | 33128.7 |
| sn-glycerol-3-phosphate abc transporter permease ugpe | E0E99_15085 | Not Available | Positive | 3105715 - 3106560 | 31531.9 |
| sn-glycerol-3-phosphate import atp-binding protein ugpc | E0E99_15090 | Not Available | Positive | 3106563 - 3107633 | 39488.3 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

