Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain 2016WA-NCV |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1298235 bp
Thymine Count
1310387 bp
Guanine Count
1400987 bp
Cytosine Count
1385082 bp
Genome Length
5394691 bp
Protein-coding Genes
4969 genes
Non-Coding Genes
283 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pyruvate kinase | E0E99_12390 | Not Available | Positive | 2544984 - 2546426 | 51451.3 |
| lauroyl-kdo(2)-lipid iv(a) myristoyltransferase | E0E99_12395 | Not Available | Negative | 2546470 - 2547441 | 37380.5 |
| murein dd-endopeptidase mepm | E0E99_12400 | Not Available | Negative | 2547561 - 2548880 | 48798.2 |
| zinc abc transporter substrate-binding protein znua | E0E99_12405 | Not Available | Negative | 2548896 - 2549840 | 34177.5 |
| zinc abc transporter atp-binding protein znuc | E0E99_12410 | Not Available | Positive | 2549919 - 2550674 | 27776.2 |
| zinc abc transporter permease subunit znub | E0E99_12415 | Not Available | Positive | 2550671 - 2551456 | 27759.4 |
| holliday junction branch migration dna helicase ruvb | E0E99_12420 | Not Available | Negative | 2551535 - 2552545 | 37177.1 |
| holliday junction branch migration protein ruva | E0E99_12425 | Not Available | Negative | 2552554 - 2553165 | 22147.1 |
| crossover junction endodeoxyribonuclease ruvc | E0E99_12430 | Not Available | Negative | 2553246 - 2553767 | 18779.9 |
| yebc/pmpr family dna-binding transcriptional regulator | E0E99_12435 | Not Available | Negative | 2553802 - 2554545 | 26485.0 |
Pathways
1346 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

