Citrobacter freundii strain 2016WA-NCV

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Citrobacter

Description

Citrobacter freundii strain 2016WA-NCV is a Gram-negative, rod-shaped bacterium that is classified as a facultative anaerobe. This strain possesses flagella, allowing for motility, and is characterized by having a single replicon. It has been isolated from diverse habitats, including hospital sewage, the intestinal tract, various sewage sources, soil, and surface waters. This bacterium is known for its role as an opportunistic pathogen, capable of causing infections in various hosts. In humans, it is associated with infections of the urinary and respiratory tracts, as well as wound infections. In veterinary contexts, C. freundii can lead to respiratory tract infections in dogs, pleuritis and urinary tract infections in cats, and respiratory issues in horses. The strain has also been identified in a range of animal hosts including mammals, amphibians, and fish, indicating its ecological versatility. The presence of C. freundii in hospital sewage and its link to infections highlights its potential public health implications, particularly in healthcare settings where immunocompromised individuals may be at greater risk. Its survival in both environmental and clinical contexts underscores the importance of monitoring such pathogens to prevent outbreaks and manage infections effectively. Furthermore, understanding the ecological niches occupied by C. freundii can provide insights into its transmission pathways and the dynamics of microbial communities in various habitats.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusCitrobacter
SpeciesCitrobacter freundii
Strainstrain 2016WA-NCV

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranesNot Available
Image of Citrobacter freundii strain 2016WA-NCV
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
Habitathospital sewage; intestinal tract; sewage; soil; surface waters
Biotic relationshipNot Available
Host(s)Homo sapiens, Metazoa, Oryctolagus cuniculus
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Citrobacter freundii strain 2016WA-NCV PROKKA_contig000212, whole

Gene Summary

Adenine Count

1298235 bp

Thymine Count

1310387 bp

Guanine Count

1400987 bp

Cytosine Count

1385082 bp

Genome Length

5394691 bp

Protein-coding Genes

4969 genes

Non-Coding Genes

283 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
superoxide response transcriptional regulator soxsE0E99_09145Not AvailablePositive1871981 - 187230412961.6
eal domain-containing proteinE0E99_09150Not AvailableNegative1872307 - 187389360447.1
hypothetical proteinE0E99_09155Not AvailablePositive1874446 - 187472710256.9
single-stranded dna-binding protein ssb1E0E99_09160Not AvailableNegative1874794 - 187531818622.8
hypothetical proteinE0E99_09165Not AvailableNegative1875278 - 187561313148.1
excinuclease abc subunit uvraE0E99_09170Not AvailablePositive1875570 - 1878392103703.0
mmcq/yjbr family dna-binding proteinE0E99_09175Not AvailableNegative1878508 - 187886413473.0
class b acid phosphataseE0E99_09180Not AvailableNegative1878992 - 187970526352.2
hypothetical proteinE0E99_09185Not AvailablePositive1879813 - 18800017064.48
aromatic amino acid transaminaseE0E99_09190Not AvailableNegative1879953 - 188114643340.8

Displaying genes 2021 – 2030 of 5252 in total

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Infections in animalsCausesPMC6885840
Infections of the urinary and respiratory tracts in humansCausesPMC6885840
Respiratory tract and wound infections in horsesCausesPMC6885840
Respiratory tract infections in dogsCausesPMC6885840
Pleuritis and urinary tract infections in catsCausesPMC6885840
Bacterial infectionsCausesPMC7578172
Opportunistic infectionsCausesPMC12838003

Displaying health effects 1 – 7 of 7 in total