Citrobacter freundii strain 2016WA-SCV

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Citrobacter

Description

Citrobacter freundii strain 2016WA-SCV is a Gram-negative, facultative anaerobic bacterium exhibiting a rod-shaped morphology and possessing flagella. It is notable for its presence in diverse environments such as hospital sewage, intestinal tracts, various soils, and surface waters. This strain has been identified in a wide array of hosts, including Homo sapiens, various metazoans, and several animal species, such as Oryctolagus cuniculus (rabbits), Canis lupus familiaris (dogs), and Felis catus (cats), among others. C. freundii is recognized for its role as an opportunistic pathogen, capable of causing infections in both humans and animals. In humans, it is associated with urinary and respiratory tract infections, while in animals, it can lead to respiratory tract infections in dogs, pleuritis and urinary tract infections in cats, and infections in horses. Given its ability to thrive in hospital sewage and other contaminated environments, this strain poses a risk for healthcare-associated infections. Notably, C. freundii strain 2016WA-SCV nonsporulating characteristic indicates it does not form spores, which may influence its survival strategies in various habitats. The presence of this bacterium in the gut metagenome and its association with multiple host species suggest a complex ecological role, potentially impacting both health and disease dynamics in these organisms. This underscores the importance of monitoring such pathogens in environmental and clinical settings to mitigate health risks.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusCitrobacter
SpeciesCitrobacter freundii
Strainstrain 2016WA-SCV

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranesNot Available
Image of Citrobacter freundii strain 2016WA-SCV
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
Habitathospital sewage; intestinal tract; sewage; soil; surface waters
Biotic relationshipNot Available
Host(s)Homo sapiens, Metazoa, Oryctolagus cuniculus
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Citrobacter freundii strain 2016WA-SCV PROKKA_contig000420, whole

Gene Summary

Adenine Count

118039 bp

Thymine Count

117524 bp

Guanine Count

108052 bp

Cytosine Count

108269 bp

Genome Length

451884 bp

Protein-coding Genes

4973 genes

Non-Coding Genes

282 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
molecular chaperoneE0F20_03585Not AvailablePositive728703 - 72934423991.8
fimbrial biogenesis outer membrane usher proteinE0F20_03590Not AvailablePositive729377 - 73186090789.0
type 1 fimbrial proteinE0F20_03595Not AvailablePositive731929 - 73289734540.2
ferrichrome porin fhuaE0F20_03600Not AvailablePositive733108 - 73535782331.5
fe3+-hydroxamate abc transporter atp-binding protein fhucE0F20_03605Not AvailablePositive735404 - 73620129045.4
fe(3+)-hydroxamate abc transporter substrate-binding protein fhudE0F20_03610Not AvailablePositive736201 - 73709133145.2
fe(3+)-hydroxamate abc transporter permease fhubE0F20_03615Not AvailablePositive737088 - 73907070218.3
h(+)/cl(-) exchange transporter clcaE0F20_03625Not AvailablePositive740592 - 74201350203.8
iron-sulfur cluster insertion protein erpaE0F20_03630Not AvailablePositive742095 - 74243912070.1
tric cation channel family proteinE0F20_03635Not AvailableNegative742559 - 74318222074.1

Displaying genes 921 – 930 of 5255 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Infections in animalsCausesPMC6885840
Infections of the urinary and respiratory tracts in humansCausesPMC6885840
Respiratory tract and wound infections in horsesCausesPMC6885840
Respiratory tract infections in dogsCausesPMC6885840
Pleuritis and urinary tract infections in catsCausesPMC6885840
Bacterial infectionsCausesPMC7578172
Opportunistic infectionsCausesPMC12838003

Displaying health effects 1 – 7 of 7 in total