Citrobacter freundii strain 2016WA-SCV

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Citrobacter

Description

Citrobacter freundii strain 2016WA-SCV is a Gram-negative, facultative anaerobic bacterium exhibiting a rod-shaped morphology and possessing flagella. It is notable for its presence in diverse environments such as hospital sewage, intestinal tracts, various soils, and surface waters. This strain has been identified in a wide array of hosts, including Homo sapiens, various metazoans, and several animal species, such as Oryctolagus cuniculus (rabbits), Canis lupus familiaris (dogs), and Felis catus (cats), among others. C. freundii is recognized for its role as an opportunistic pathogen, capable of causing infections in both humans and animals. In humans, it is associated with urinary and respiratory tract infections, while in animals, it can lead to respiratory tract infections in dogs, pleuritis and urinary tract infections in cats, and infections in horses. Given its ability to thrive in hospital sewage and other contaminated environments, this strain poses a risk for healthcare-associated infections. Notably, C. freundii strain 2016WA-SCV nonsporulating characteristic indicates it does not form spores, which may influence its survival strategies in various habitats. The presence of this bacterium in the gut metagenome and its association with multiple host species suggest a complex ecological role, potentially impacting both health and disease dynamics in these organisms. This underscores the importance of monitoring such pathogens in environmental and clinical settings to mitigate health risks.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusCitrobacter
SpeciesCitrobacter freundii
Strainstrain 2016WA-SCV

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranesNot Available
Image of Citrobacter freundii strain 2016WA-SCV
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
Habitathospital sewage; intestinal tract; sewage; soil; surface waters
Biotic relationshipNot Available
Host(s)Homo sapiens, Metazoa, Oryctolagus cuniculus
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Citrobacter freundii strain 2016WA-SCV PROKKA_contig000420, whole

Gene Summary

Adenine Count

118039 bp

Thymine Count

117524 bp

Guanine Count

108052 bp

Cytosine Count

108269 bp

Genome Length

451884 bp

Protein-coding Genes

4973 genes

Non-Coding Genes

282 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ribosome maturation factor rimpE0F20_01285Not AvailableNegative267782 - 26824617054.5
Trna-metNot AvailableNot AvailablePositive268442 - 268518Not Available
argininosuccinate synthaseE0F20_01295Not AvailablePositive268852 - 27019549885.3
Trna-leuNot AvailableNot AvailablePositive270401 - 270487Not Available
hypothetical proteinE0F20_01300Not AvailableNegative270086 - 27043013412.7
preprotein translocase subunit secgE0F20_01310Not AvailableNegative270497 - 27082911357.8
lysr family transcriptional regulatorE0F20_01315Not AvailableNegative270997 - 27189034282.5
beta-aspartyl-peptidaseE0F20_01320Not AvailablePositive272039 - 27317239911.6
c4-dicarboxylate abc transporterE0F20_01325Not AvailablePositive273183 - 27464951802.5
phosphoglucosamine mutaseE0F20_01330Not AvailableNegative274694 - 27603147541.5

Displaying genes 481 – 490 of 5255 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Infections in animalsCausesPMC6885840
Infections of the urinary and respiratory tracts in humansCausesPMC6885840
Respiratory tract and wound infections in horsesCausesPMC6885840
Respiratory tract infections in dogsCausesPMC6885840
Pleuritis and urinary tract infections in catsCausesPMC6885840
Bacterial infectionsCausesPMC7578172
Opportunistic infectionsCausesPMC12838003

Displaying health effects 1 – 7 of 7 in total