Citrobacter freundii strain 2016WA-SCV

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Citrobacter

Description

Citrobacter freundii strain 2016WA-SCV is a Gram-negative, facultative anaerobic bacterium exhibiting a rod-shaped morphology and possessing flagella. It is notable for its presence in diverse environments such as hospital sewage, intestinal tracts, various soils, and surface waters. This strain has been identified in a wide array of hosts, including Homo sapiens, various metazoans, and several animal species, such as Oryctolagus cuniculus (rabbits), Canis lupus familiaris (dogs), and Felis catus (cats), among others. C. freundii is recognized for its role as an opportunistic pathogen, capable of causing infections in both humans and animals. In humans, it is associated with urinary and respiratory tract infections, while in animals, it can lead to respiratory tract infections in dogs, pleuritis and urinary tract infections in cats, and infections in horses. Given its ability to thrive in hospital sewage and other contaminated environments, this strain poses a risk for healthcare-associated infections. Notably, C. freundii strain 2016WA-SCV nonsporulating characteristic indicates it does not form spores, which may influence its survival strategies in various habitats. The presence of this bacterium in the gut metagenome and its association with multiple host species suggest a complex ecological role, potentially impacting both health and disease dynamics in these organisms. This underscores the importance of monitoring such pathogens in environmental and clinical settings to mitigate health risks.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusCitrobacter
SpeciesCitrobacter freundii
Strainstrain 2016WA-SCV

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranesNot Available
Image of Citrobacter freundii strain 2016WA-SCV
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
Habitathospital sewage; intestinal tract; sewage; soil; surface waters
Biotic relationshipNot Available
Host(s)Homo sapiens, Metazoa, Oryctolagus cuniculus
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Citrobacter freundii strain 2016WA-SCV PROKKA_contig000420, whole

Gene Summary

Adenine Count

118039 bp

Thymine Count

117524 bp

Guanine Count

108052 bp

Cytosine Count

108269 bp

Genome Length

451884 bp

Protein-coding Genes

4973 genes

Non-Coding Genes

282 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinE0F20_24910Not AvailableNegative5020339 - 50205949286.15
diol dehydratase reactivase subunit alphaE0F20_24915Not AvailablePositive5020595 - 502178741516.8
aquaporinE0F20_24920Not AvailablePositive5021841 - 502264428082.9
acid-activated periplasmic chaperone hdebE0F20_24925Not AvailableNegative5022696 - 502302512135.7
fcd domain-containing proteinE0F20_24930Not AvailablePositive5023060 - 502346415509.7
plasmid stability proteinE0F20_24935Not AvailableNegative5023491 - 502387714337.3
plasmid stabilization proteinE0F20_24940Not AvailableNegative5023891 - 502485334337.1
acyltransferaseE0F20_24945Not AvailablePositive5025215 - 502615036033.8
thiol:disulfide interchange protein dsbaE0F20_24950Not AvailableNegative5026164 - 502678722971.7
serine/threonine protein kinaseE0F20_24955Not AvailableNegative5026804 - 502779038252.5

Displaying genes 4881 – 4890 of 5255 in total

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Infections in animalsCausesPMC6885840
Infections of the urinary and respiratory tracts in humansCausesPMC6885840
Respiratory tract and wound infections in horsesCausesPMC6885840
Respiratory tract infections in dogsCausesPMC6885840
Pleuritis and urinary tract infections in catsCausesPMC6885840
Bacterial infectionsCausesPMC7578172
Opportunistic infectionsCausesPMC12838003

Displaying health effects 1 – 7 of 7 in total