Citrobacter freundii strain ICR003203

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Citrobacter

Description

Citrobacter freundii strain ICR003203 is a Gram-negative, facultative anaerobic bacterium characterized by its rod-shaped morphology and the presence of flagella. This strain has been isolated from diverse habitats, including hospital sewage, intestinal tracts, sewage systems, soil, and surface waters. The strain contains a single replicon and has been associated with various hosts, including Homo sapiens, multiple animal species such as rabbits (Oryctolagus cuniculus), dogs (Canis lupus familiaris), cats (Felis catus), as well as fish like Tilapia and Cyprinus carpio. C. freundii is known to be an opportunistic pathogen, capable of causing infections in both humans and animals. In humans, it can lead to infections of the urinary and respiratory tracts, while in animals, it has been documented to cause respiratory tract and wound infections in horses, as well as pleuritis and urinary tract infections in cats. Dogs can also experience respiratory tract infections due to this bacterium. The presence of C. freundii in various environments, including hospital sewage, suggests its potential role in the dissemination of antibiotic resistance and its adaptation to human-associated habitats. Its diverse host range indicates that it can thrive in different ecological niches, highlighting its opportunistic nature. Understanding the ecological distribution and pathogenic potential of this strain can provide insights into the risks associated with its presence in clinical and environmental settings.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusCitrobacter
SpeciesCitrobacter freundii
Strainstrain ICR003203

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranesNot Available
Image of Citrobacter freundii strain ICR003203
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
Habitathospital sewage; intestinal tract; sewage; soil; surface waters
Biotic relationshipNot Available
Host(s)Homo sapiens, Metazoa, Oryctolagus cuniculus
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Citrobacter freundii strain ICR003203

Gene Summary

Adenine Count

1394129 bp

Thymine Count

1389524 bp

Guanine Count

1469456 bp

Cytosine Count

1500121 bp

Genome Length

5800903 bp

Protein-coding Genes

5611 genes

Non-Coding Genes

331 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
yciy family proteinEVY18_29165Not AvailablePositive5545592 - 55457657041.78
ycii family proteinEVY18_29170Not AvailableNegative5545816 - 554611210481.4
tonb system transport protein tonbEVY18_29175Not AvailablePositive5546337 - 554705626081.7
acyl-coa thioester hydrolase yciaEVY18_29180Not AvailableNegative5547121 - 554752214366.6
septation protein aEVY18_29185Not AvailableNegative5547688 - 554822720769.1
upf0259 family proteinEVY18_29190Not AvailableNegative5548282 - 55484184882.3
hypothetical proteinEVY18_29195Not AvailableNegative5548419 - 554870910590.5
hypothetical proteinEVY18_29200Not AvailablePositive5549276 - 55494827954.6
hypothetical proteinEVY18_29205Not AvailableNegative5549586 - 555001716600.0
dsbc family proteinEVY18_29215Not AvailablePositive5551003 - 55511033523.32

Displaying genes 5641 – 5650 of 5943 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Infections in animalsCausesPMC6885840
Infections of the urinary and respiratory tracts in humansCausesPMC6885840
Respiratory tract and wound infections in horsesCausesPMC6885840
Respiratory tract infections in dogsCausesPMC6885840
Pleuritis and urinary tract infections in catsCausesPMC6885840
Bacterial infectionsCausesPMC7578172
Opportunistic infectionsCausesPMC12838003

Displaying health effects 1 – 7 of 7 in total