Citrobacter freundii strain ICR003203

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Citrobacter

Description

Citrobacter freundii strain ICR003203 is a Gram-negative, facultative anaerobic bacterium characterized by its rod-shaped morphology and the presence of flagella. This strain has been isolated from diverse habitats, including hospital sewage, intestinal tracts, sewage systems, soil, and surface waters. The strain contains a single replicon and has been associated with various hosts, including Homo sapiens, multiple animal species such as rabbits (Oryctolagus cuniculus), dogs (Canis lupus familiaris), cats (Felis catus), as well as fish like Tilapia and Cyprinus carpio. C. freundii is known to be an opportunistic pathogen, capable of causing infections in both humans and animals. In humans, it can lead to infections of the urinary and respiratory tracts, while in animals, it has been documented to cause respiratory tract and wound infections in horses, as well as pleuritis and urinary tract infections in cats. Dogs can also experience respiratory tract infections due to this bacterium. The presence of C. freundii in various environments, including hospital sewage, suggests its potential role in the dissemination of antibiotic resistance and its adaptation to human-associated habitats. Its diverse host range indicates that it can thrive in different ecological niches, highlighting its opportunistic nature. Understanding the ecological distribution and pathogenic potential of this strain can provide insights into the risks associated with its presence in clinical and environmental settings.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusCitrobacter
SpeciesCitrobacter freundii
Strainstrain ICR003203

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranesNot Available
Image of Citrobacter freundii strain ICR003203
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
Habitathospital sewage; intestinal tract; sewage; soil; surface waters
Biotic relationshipNot Available
Host(s)Homo sapiens, Metazoa, Oryctolagus cuniculus
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Citrobacter freundii strain ICR003203

Gene Summary

Adenine Count

1394129 bp

Thymine Count

1389524 bp

Guanine Count

1469456 bp

Cytosine Count

1500121 bp

Genome Length

5800903 bp

Protein-coding Genes

5611 genes

Non-Coding Genes

331 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
lysr family transcriptional regulatorEVY18_12015Not AvailablePositive2431024 - 243195934799.2
aspartate/glutamate racemaseEVY18_12020Not AvailableNegative2431931 - 243263825777.9
cupin domain-containing proteinEVY18_12025Not AvailablePositive2432780 - 243310612178.6
rpn family recombination-promoting nuclease/putative transposaseEVY18_12030Not AvailablePositive2433303 - 243419033800.1
sugar porter family mfs transporterEVY18_12035Not AvailableNegative2434246 - 243566451701.6
2-dehydro-3-deoxy-d-gluconate 5-dehydrogenase kdudEVY18_12040Not AvailableNegative2435979 - 243674027099.6
5-dehydro-4-deoxy-d-glucuronate isomeraseEVY18_12045Not AvailableNegative2436798 - 243763431130.3
acetyl-coa c-acetyltransferaseEVY18_12050Not AvailableNegative2438106 - 243928441327.6
lysr family transcriptional regulatorEVY18_12055Not AvailableNegative2439387 - 244027132736.2
multidrug/biocide efflux pace transporterEVY18_12060Not AvailablePositive2440373 - 244082817437.6

Displaying genes 2481 – 2490 of 5943 in total

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Infections in animalsCausesPMC6885840
Infections of the urinary and respiratory tracts in humansCausesPMC6885840
Respiratory tract and wound infections in horsesCausesPMC6885840
Respiratory tract infections in dogsCausesPMC6885840
Pleuritis and urinary tract infections in catsCausesPMC6885840
Bacterial infectionsCausesPMC7578172
Opportunistic infectionsCausesPMC12838003

Displaying health effects 1 – 7 of 7 in total