Shigella boydii strain DMB SH20032

Gram-negativeRodNon-motileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Shigella

Description

Shigella boydii strain DMB SH20032 is a significant pathogen associated with shigellosis, primarily affecting Homo sapiens and various Metazoa. This bacterium exhibits a rod shape and is classified as Gram-negative, indicating its cell wall structure that can influence its interaction with host organisms. It is a chemoorganotroph, utilizing organic compounds as energy sources, and is classified as a facultative anaerobe, allowing it to thrive in both oxygen-rich and oxygen-poor environments. DMB SH20032 typically exists in pairs or singles, and it is characterized by the presence of flagella, although it is non-motile. With an optimal growth temperature of 37°C, it falls within the mesophilic temperature range, indicating its preference for moderate temperature environments that are often found in host organisms. This strain has a single replicon and is composed of two membranes, a trait typical of Gram-negative bacteria. In its ecological role, S. boydii is free-living, yet it establishes pathogenic relationships with human hosts, leading to significant health concerns associated with gastrointestinal infections. Understanding the traits of Shigella boydii strain DMB SH20032 highlights its adaptation to host-associated environments and its potential impact on public health through the transmission of shigellosis. These characteristics underscore the importance of monitoring and studying this pathogen to mitigate its effects on human populations.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusShigella
SpeciesShigella boydii
Strainstrain DMB SH20032

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Shigella boydii strain DMB SH20032
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Metazoa
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceChemoorganotroph
PathogenicityNot Available

Genome Summary

Shigella boydii strain DMB SH20032

Gene Summary

Adenine Count

1219558 bp

Thymine Count

1220680 bp

Guanine Count

1242061 bp

Cytosine Count

1235334 bp

Genome Length

4917633 bp

Protein-coding Genes

4525 genes

Non-Coding Genes

223 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
yjjw family glycine radical enzyme activaseCUA56_12220Not AvailableNegative2426050 - 242691331697.5
yjji family glycine radical enzymeCUA56_12225Not AvailableNegative2426885 - 242843558055.3
deoxyribose-phosphate aldolaseCUA56_12230Not AvailablePositive2428693 - 242947227776.4
thymidine phosphorylaseCUA56_12235Not AvailablePositive2429599 - 243092147182.9
phosphopentomutaseCUA56_12240Not AvailablePositive2430973 - 243219644372.4
purine-nucleoside phosphorylaseCUA56_12245Not AvailablePositive2432276 - 243299525937.4
xre family transcriptional regulatorCUA56_12250Not AvailableNegative2433079 - 243334210042.5
lipoate--protein ligase lplaCUA56_12255Not AvailableNegative2433374 - 243439037838.7
ytjb family periplasmic proteinCUA56_12260Not AvailableNegative2434418 - 243506224047.1
phosphoserine phosphataseCUA56_12265Not AvailablePositive2435168 - 243613635044.8

Displaying genes 2351 – 2360 of 4748 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
ShigellosisCausesPMC5177732

Displaying health effects 1 – 1 of 1 in total