Shigella boydii strain DMB SH20032

Gram-negativeRodNon-motileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Shigella

Description

Shigella boydii strain DMB SH20032 is a significant pathogen associated with shigellosis, primarily affecting Homo sapiens and various Metazoa. This bacterium exhibits a rod shape and is classified as Gram-negative, indicating its cell wall structure that can influence its interaction with host organisms. It is a chemoorganotroph, utilizing organic compounds as energy sources, and is classified as a facultative anaerobe, allowing it to thrive in both oxygen-rich and oxygen-poor environments. DMB SH20032 typically exists in pairs or singles, and it is characterized by the presence of flagella, although it is non-motile. With an optimal growth temperature of 37°C, it falls within the mesophilic temperature range, indicating its preference for moderate temperature environments that are often found in host organisms. This strain has a single replicon and is composed of two membranes, a trait typical of Gram-negative bacteria. In its ecological role, S. boydii is free-living, yet it establishes pathogenic relationships with human hosts, leading to significant health concerns associated with gastrointestinal infections. Understanding the traits of Shigella boydii strain DMB SH20032 highlights its adaptation to host-associated environments and its potential impact on public health through the transmission of shigellosis. These characteristics underscore the importance of monitoring and studying this pathogen to mitigate its effects on human populations.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusShigella
SpeciesShigella boydii
Strainstrain DMB SH20032

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Shigella boydii strain DMB SH20032
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Metazoa
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceChemoorganotroph
PathogenicityNot Available

Genome Summary

Shigella boydii strain DMB SH20032

Gene Summary

Adenine Count

1219558 bp

Thymine Count

1220680 bp

Guanine Count

1242061 bp

Cytosine Count

1235334 bp

Genome Length

4917633 bp

Protein-coding Genes

4525 genes

Non-Coding Genes

223 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
serine-type d-ala-d-ala carboxypeptidase dacdCUA56_06200Not AvailablePositive1243242 - 124440843364.5
dna gyrase inhibitor sbmcCUA56_06205Not AvailablePositive1244527 - 124500018054.3
fusc family proteinCUA56_06210Not AvailablePositive1245198 - 124625639957.7
duf496 family proteinCUA56_06215Not AvailablePositive1246428 - 124675712778.5
propanediol utilization proteinCUA56_06220Not AvailableNegative1246858 - 12471339728.75
cobalamin biosynthesis proteinCUA56_06225Not AvailablePositive1247133 - 124749212877.2
bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferaseCUA56_06230Not AvailablePositive1247626 - 124817120101.1
adenosylcobinamide-gdp ribazoletransferaseCUA56_06235Not AvailablePositive1248168 - 124891126381.4
nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferaseCUA56_06240Not AvailablePositive1248923 - 124999337002.7
l,d-transpeptidaseCUA56_06245Not AvailablePositive1250066 - 125098934122.8

Displaying genes 1251 – 1260 of 4748 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
ShigellosisCausesPMC5177732

Displaying health effects 1 – 1 of 1 in total