Shigella boydii strain DMB SH134

Gram-negativeRodNon-motileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Shigella

Description

Shigella boydii strain DMB SH134 is a Gram-negative, rod-shaped bacterium that primarily resides in host-associated environments, particularly in Homo sapiens and Metazoa. This organism is classified as a facultative anaerobe, allowing it to thrive in both the presence and absence of oxygen. It is a chemoorganotroph, deriving energy from organic compounds. Shigella boydii DMB SH134 exhibits a cell arrangement that can be described as pairs and singles, and it possesses flagella, although it is not mobile. The bacterium has a mesophilic temperature range, with an optimal growth temperature of 37°C, which coincides with the average human body temperature, facilitating its role as a pathogen. This strain is known to be associated with shigellosis, a significant health concern, particularly in areas with inadequate sanitation. The bacterium has a biotic relationship characterized as free-living, indicating its ability to exist independently in its environment, although it primarily relies on hosts for survival and propagation. In summary, Shigella boydii strain DMB SH134 is a pathogenic organism that underscores the intricate relationship between human health and microbial ecology. Its adaptation to host-associated habitats and its pathogenic potential highlight the significance of monitoring such bacteria to mitigate the spread of shigellosis, particularly in vulnerable populations. The presence of only one replicon and two membranes further emphasizes its structural simplicity relative to other, more complex microorganisms.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusShigella
SpeciesShigella boydii
Strainstrain DMB SH134

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Shigella boydii strain DMB SH134
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Metazoa
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceChemoorganotroph
PathogenicityNot Available

Genome Summary

Shigella boydii strain DMB SH134

Gene Summary

Adenine Count

1179951 bp

Thymine Count

1180164 bp

Guanine Count

1201480 bp

Cytosine Count

1210614 bp

Genome Length

4772209 bp

Protein-coding Genes

4434 genes

Non-Coding Genes

251 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
1-deoxy-d-xylulose-5-phosphate synthaseUL57_02940Not AvailablePositive601760 - 60362267635.9
aldo/keto reductaseUL57_02945Not AvailablePositive603677 - 60465136464.2
phosphatidylglycerophosphatase aUL57_02950Not AvailableNegative604705 - 60522319419.2
thiamine-phosphate kinaseUL57_02955Not AvailableNegative605201 - 60617835083.9
n utilization substance protein bUL57_02960Not AvailableNegative606256 - 60667515689.9
6,7-dimethyl-8-ribityllumazine synthaseUL57_02965Not AvailableNegative606695 - 60716516157.4
bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase ribdUL57_02970Not AvailableNegative607254 - 60835740343.7
transcriptional regulator nrdrUL57_02975Not AvailableNegative608361 - 60881017229.9
duf3251 domain-containing proteinUL57_02980Not AvailablePositive608961 - 60950019698.7
nucleoside-specific channel-forming protein tsxUL57_02985Not AvailablePositive609799 - 61068333604.7

Displaying genes 741 – 750 of 4685 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
ShigellosisCausesPMC5177732

Displaying health effects 1 – 1 of 1 in total