Shigella boydii strain DMB SH134

Gram-negativeRodNon-motileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Shigella

Description

Shigella boydii strain DMB SH134 is a Gram-negative, rod-shaped bacterium that primarily resides in host-associated environments, particularly in Homo sapiens and Metazoa. This organism is classified as a facultative anaerobe, allowing it to thrive in both the presence and absence of oxygen. It is a chemoorganotroph, deriving energy from organic compounds. Shigella boydii DMB SH134 exhibits a cell arrangement that can be described as pairs and singles, and it possesses flagella, although it is not mobile. The bacterium has a mesophilic temperature range, with an optimal growth temperature of 37°C, which coincides with the average human body temperature, facilitating its role as a pathogen. This strain is known to be associated with shigellosis, a significant health concern, particularly in areas with inadequate sanitation. The bacterium has a biotic relationship characterized as free-living, indicating its ability to exist independently in its environment, although it primarily relies on hosts for survival and propagation. In summary, Shigella boydii strain DMB SH134 is a pathogenic organism that underscores the intricate relationship between human health and microbial ecology. Its adaptation to host-associated habitats and its pathogenic potential highlight the significance of monitoring such bacteria to mitigate the spread of shigellosis, particularly in vulnerable populations. The presence of only one replicon and two membranes further emphasizes its structural simplicity relative to other, more complex microorganisms.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusShigella
SpeciesShigella boydii
Strainstrain DMB SH134

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Shigella boydii strain DMB SH134
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Metazoa
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceChemoorganotroph
PathogenicityNot Available

Genome Summary

Shigella boydii strain DMB SH134

Gene Summary

Adenine Count

1179951 bp

Thymine Count

1180164 bp

Guanine Count

1201480 bp

Cytosine Count

1210614 bp

Genome Length

4772209 bp

Protein-coding Genes

4434 genes

Non-Coding Genes

251 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinUL57_08785Not AvailablePositive1706876 - 17070888189.05
type i dna topoisomeraseUL57_08790Not AvailablePositive1707211 - 170980897376.1
lysr family transcriptional regulator cysbUL57_08800Not AvailablePositive1710018 - 171099236152.5
ymia family putative membrane proteinUL57_08805Not AvailablePositive1711287 - 17114516232.76
hypothetical proteinUL57_08810Not AvailablePositive1711454 - 17116216324.16
acna regulatory region 60-length spurious proteinUL57_08815Not AvailablePositive1711758 - 17119406524.02
gtp cyclohydrolase iiUL57_08825Not AvailableNegative1714690 - 171528021936.4
phosphatidylglycerophosphatase bUL57_08830Not AvailablePositive1715450 - 171621429052.8
lapa family proteinUL57_08835Not AvailablePositive1716363 - 171667111352.1
lipopolysaccharide assembly protein lapbUL57_08840Not AvailablePositive1716678 - 171784744501.5

Displaying genes 1801 – 1810 of 4685 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
ShigellosisCausesPMC5177732

Displaying health effects 1 – 1 of 1 in total